Non-targeted metabolite profiling of citrus juices as a tool for variety discrimination and metabolite flow analysis
Identifieur interne : 000523 ( Main/Exploration ); précédent : 000522; suivant : 000524Non-targeted metabolite profiling of citrus juices as a tool for variety discrimination and metabolite flow analysis
Auteurs : Vicent Arbona [Espagne] ; Domingo J. Iglesias [Espagne] ; Aurelio G Mez-Cadenas [Espagne]Source :
- BMC Plant Biology [ 1471-2229 ] ; 2015.
Abstract
Genetic diversity of citrus includes intrageneric hybrids, cultivars arising from cross-pollination and/or somatic mutations with particular biochemical compounds such as sugar, acids and secondary metabolite composition.
Secondary metabolite profiles of juices from 12 commercial varieties grouped into blonde and navel types, mandarins, lemons and grapefruits were analyzed by LC/ESI-QTOF-MS. HCA on metabolite profiling data revealed the existence of natural groups demarcating fruit types and varieties associated to specific composition patterns. The unbiased classification provided by HCA was used for PLS-DA to find the potential variables (mass chromatographic features) responsible for the classification. Abscisic acid and derivatives, several flavonoids and limonoids were identified by analysis of mass spectra. To facilitate interpretation, metabolites were represented as flow charts depicting biosynthetic pathways. Mandarins ‘Fortune’ and ‘Hernandina’ along with oranges showed higher ABA contents and ABA degradation products were present as glycosylated forms in oranges and certain mandarins. All orange and grapefruit varieties showed high limonin contents and its glycosylated form, that was only absent in lemons. The rest of identified limonoids were highly abundant in oranges. Particularly, Sucrenya cultivar showed a specific accumulation of obacunone and limonoate A-ring lactone. Polymethoxylated flavanones (tangeritin and isomers) were absolutely absent from lemons and grapefruits whereas kaempferol deoxyhexose hexose isomer #2, naringin and neohesperidin were only present in these cultivars.
Analysis of relative metabolite build-up in closely-related genotypes allowed the efficient demarcation of cultivars and suggested the existence of genotype-specific regulatory mechanisms underlying the differential metabolite accumulation.
The online version of this article (doi:10.1186/s12870-015-0430-8) contains supplementary material, which is available to authorized users.
Url:
DOI: 10.1186/s12870-015-0430-8
PubMed: 25652567
PubMed Central: 4329192
Affiliations:
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Iglesias</name><affiliation wicri:level="1"><nlm:aff id="Aff2">Institut Valencià d’Investigacions Agràries (IVIA), Moncada, Spain</nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea>Institut Valencià d’Investigacions Agràries (IVIA), Moncada</wicri:regionArea><wicri:noRegion>Moncada</wicri:noRegion></affiliation></author><author><name sortKey="G Mez Cadenas, Aurelio" sort="G Mez Cadenas, Aurelio" uniqKey="G Mez Cadenas A" first="Aurelio" last="G Mez-Cadenas">Aurelio G Mez-Cadenas</name><affiliation wicri:level="2"><nlm:aff id="Aff1">Laboratori d’Ecofisiologia i Biotecnologia, Departament de Ciències Agràries i del Medi Natural, Universitat Jaume I, E-12071 Castelló de la Plana, Spain</nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea>Laboratori d’Ecofisiologia i Biotecnologia, Departament de Ciències Agràries i del Medi Natural, Universitat Jaume I, E-12071 Castelló de la Plana</wicri:regionArea><placeName><region nuts="2" type="communauté">Communauté valencienne</region></placeName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">25652567</idno><idno type="pmc">4329192</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4329192</idno><idno type="RBID">PMC:4329192</idno><idno type="doi">10.1186/s12870-015-0430-8</idno><date when="2015">2015</date><idno type="wicri:Area/Pmc/Corpus">000620</idno><idno type="wicri:Area/Pmc/Curation">000619</idno><idno type="wicri:Area/Pmc/Checkpoint">000408</idno><idno type="wicri:Area/Ncbi/Merge">001995</idno><idno type="wicri:Area/Ncbi/Curation">001995</idno><idno type="wicri:Area/Ncbi/Checkpoint">001995</idno><idno type="wicri:Area/Main/Merge">000523</idno><idno type="wicri:Area/Main/Curation">000523</idno><idno type="wicri:Area/Main/Exploration">000523</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Non-targeted metabolite profiling of citrus juices as a tool for variety discrimination and metabolite flow analysis</title><author><name sortKey="Arbona, Vicent" sort="Arbona, Vicent" uniqKey="Arbona V" first="Vicent" last="Arbona">Vicent Arbona</name><affiliation wicri:level="2"><nlm:aff id="Aff1">Laboratori d’Ecofisiologia i Biotecnologia, Departament de Ciències Agràries i del Medi Natural, Universitat Jaume I, E-12071 Castelló de la Plana, Spain</nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea>Laboratori d’Ecofisiologia i Biotecnologia, Departament de Ciències Agràries i del Medi Natural, Universitat Jaume I, E-12071 Castelló de la Plana</wicri:regionArea><placeName><region nuts="2" type="communauté">Communauté valencienne</region></placeName></affiliation></author><author><name sortKey="Iglesias, Domingo J" sort="Iglesias, Domingo J" uniqKey="Iglesias D" first="Domingo J" last="Iglesias">Domingo J. Iglesias</name><affiliation wicri:level="1"><nlm:aff id="Aff2">Institut Valencià d’Investigacions Agràries (IVIA), Moncada, Spain</nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea>Institut Valencià d’Investigacions Agràries (IVIA), Moncada</wicri:regionArea><wicri:noRegion>Moncada</wicri:noRegion></affiliation></author><author><name sortKey="G Mez Cadenas, Aurelio" sort="G Mez Cadenas, Aurelio" uniqKey="G Mez Cadenas A" first="Aurelio" last="G Mez-Cadenas">Aurelio G Mez-Cadenas</name><affiliation wicri:level="2"><nlm:aff id="Aff1">Laboratori d’Ecofisiologia i Biotecnologia, Departament de Ciències Agràries i del Medi Natural, Universitat Jaume I, E-12071 Castelló de la Plana, Spain</nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea>Laboratori d’Ecofisiologia i Biotecnologia, Departament de Ciències Agràries i del Medi Natural, Universitat Jaume I, E-12071 Castelló de la Plana</wicri:regionArea><placeName><region nuts="2" type="communauté">Communauté valencienne</region></placeName></affiliation></author></analytic><series><title level="j">BMC Plant Biology</title><idno type="eISSN">1471-2229</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p>Genetic diversity of citrus includes intrageneric hybrids, cultivars arising from cross-pollination and/or somatic mutations with particular biochemical compounds such as sugar, acids and secondary metabolite composition.</p></sec><sec><title>Results</title><p>Secondary metabolite profiles of juices from 12 commercial varieties grouped into blonde and navel types, mandarins, lemons and grapefruits were analyzed by LC/ESI-QTOF-MS. HCA on metabolite profiling data revealed the existence of natural groups demarcating fruit types and varieties associated to specific composition patterns. The unbiased classification provided by HCA was used for PLS-DA to find the potential variables (mass chromatographic features) responsible for the classification. Abscisic acid and derivatives, several flavonoids and limonoids were identified by analysis of mass spectra. To facilitate interpretation, metabolites were represented as flow charts depicting biosynthetic pathways. Mandarins ‘Fortune’ and ‘Hernandina’ along with oranges showed higher ABA contents and ABA degradation products were present as glycosylated forms in oranges and certain mandarins. All orange and grapefruit varieties showed high limonin contents and its glycosylated form, that was only absent in lemons. The rest of identified limonoids were highly abundant in oranges. Particularly, Sucrenya cultivar showed a specific accumulation of obacunone and limonoate A-ring lactone. Polymethoxylated flavanones (tangeritin and isomers) were absolutely absent from lemons and grapefruits whereas kaempferol deoxyhexose hexose isomer #2, naringin and neohesperidin were only present in these cultivars.</p></sec><sec><title>Conclusions</title><p>Analysis of relative metabolite build-up in closely-related genotypes allowed the efficient demarcation of cultivars and suggested the existence of genotype-specific regulatory mechanisms underlying the differential metabolite accumulation.</p></sec><sec><title>Electronic supplementary material</title><p>The online version of this article (doi:10.1186/s12870-015-0430-8) contains supplementary material, which is available to authorized users.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Distefano, G" uniqKey="Distefano G">G Distefano</name></author><author><name sortKey="Las Casas, G" uniqKey="Las Casas G">G Las Casas</name></author><author><name sortKey="Caruso, M" 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Frydman</name></author><author><name sortKey="Liberman, R" uniqKey="Liberman R">R Liberman</name></author><author><name sortKey="Huhman, Dv" uniqKey="Huhman D">DV Huhman</name></author><author><name sortKey="Carmeli Weissberg, M" uniqKey="Carmeli Weissberg M">M Carmeli-Weissberg</name></author><author><name sortKey="Sapir Mir, M" uniqKey="Sapir Mir M">M Sapir-Mir</name></author><author><name sortKey="Ophir, R" uniqKey="Ophir R">R Ophir</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Espagne</li></country><region><li>Communauté valencienne</li></region></list><tree><country name="Espagne"><region name="Communauté valencienne"><name sortKey="Arbona, Vicent" sort="Arbona, Vicent" uniqKey="Arbona V" first="Vicent" last="Arbona">Vicent Arbona</name></region><name sortKey="G Mez Cadenas, Aurelio" sort="G Mez Cadenas, Aurelio" uniqKey="G Mez Cadenas A" first="Aurelio" last="G Mez-Cadenas">Aurelio G Mez-Cadenas</name><name sortKey="Iglesias, Domingo J" sort="Iglesias, Domingo J" uniqKey="Iglesias D" first="Domingo J" last="Iglesias">Domingo J. Iglesias</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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